Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
Col8a1Q00780 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Gm13689-201ENSMUST00000119360 685 ntBASIC11.85□□□□□ -0.51
Col8a1Q00780 Gm2639-201ENSMUST00000156881 1297 ntBASIC11.85□□□□□ -0.51
Col8a1Q00780 Gm24644-201ENSMUST00000157114 139 ntBASIC11.85□□□□□ -0.51
Col8a1Q00780 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC11.85□□□□□ -0.51
Col8a1Q00780 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC11.85□□□□□ -0.51
Col8a1Q00780 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Gm3961-201ENSMUST00000204425 994 ntBASIC11.85□□□□□ -0.51
Col8a1Q00780 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
Col8a1Q00780 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC11.85□□□□□ -0.51
Col8a1Q00780 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC11.85□□□□□ -0.51
Col8a1Q00780 AC192088.1-201ENSMUST00000227561 301 ntBASIC11.85□□□□□ -0.51
Col8a1Q00780 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Col8a1Q00780 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Col8a1Q00780 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Col8a1Q00780 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Gm7553-201ENSMUST00000185805 1426 ntBASIC11.85□□□□□ -0.51
Col8a1Q00780 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Col8a1Q00780 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Gm16177-201ENSMUST00000120728 718 ntBASIC11.84□□□□□ -0.51
Col8a1Q00780 Gm12176-201ENSMUST00000121420 875 ntBASIC11.84□□□□□ -0.51
Col8a1Q00780 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Gm38266-201ENSMUST00000194931 421 ntBASIC11.84□□□□□ -0.51
Col8a1Q00780 Gm19184-201ENSMUST00000196798 928 ntBASIC11.84□□□□□ -0.51
Col8a1Q00780 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Gm7783-201ENSMUST00000204795 781 ntBASIC11.84□□□□□ -0.51
Col8a1Q00780 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC11.84□□□□□ -0.51
Col8a1Q00780 AC134335.2-201ENSMUST00000227660 440 ntBASIC11.84□□□□□ -0.51
Col8a1Q00780 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Col8a1Q00780 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Col8a1Q00780 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Col8a1Q00780 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Col8a1Q00780 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Col8a1Q00780 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC11.83□□□□□ -0.51
Col8a1Q00780 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm10710-201ENSMUST00000047876 3971 ntBASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms