Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Cux1P53564 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Cux1P53564 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC21.04■□□□□ 0.96
Cux1P53564 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC21.04■□□□□ 0.96
Cux1P53564 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC21.04■□□□□ 0.96
Cux1P53564 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC21.04■□□□□ 0.96
Cux1P53564 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Cux1P53564 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC21.04■□□□□ 0.96
Cux1P53564 Gm12134-201ENSMUST00000122109 520 ntBASIC21.04■□□□□ 0.96
Cux1P53564 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC21.04■□□□□ 0.96
Cux1P53564 Gm16379-201ENSMUST00000161469 348 ntBASIC21.04■□□□□ 0.96
Cux1P53564 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Cux1P53564 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC21.04■□□□□ 0.96
Cux1P53564 Gm8762-201ENSMUST00000193486 339 ntBASIC21.04■□□□□ 0.96
Cux1P53564 Gm9368-201ENSMUST00000219348 831 ntBASIC21.04■□□□□ 0.96
Cux1P53564 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Gm16372-201ENSMUST00000073088 450 ntBASIC21.04■□□□□ 0.96
Cux1P53564 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cux1P53564 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Cux1P53564 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Gm15889-202ENSMUST00000212669 2443 ntBASIC21.03■□□□□ 0.96
Cux1P53564 Gm45212-201ENSMUST00000205831 3403 ntBASIC21.03■□□□□ 0.96
Cux1P53564 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Cux1P53564 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Gm37297-201ENSMUST00000192974 2384 ntBASIC21.03■□□□□ 0.96
Cux1P53564 AC096628.2-201ENSMUST00000225443 1413 ntBASIC21.03■□□□□ 0.96
Cux1P53564 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Gm12241-201ENSMUST00000118330 726 ntBASIC21.03■□□□□ 0.96
Cux1P53564 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Gm43598-201ENSMUST00000202482 2479 ntBASIC21.03■□□□□ 0.96
Cux1P53564 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cux1P53564 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Cux1P53564 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cux1P53564 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cux1P53564 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cux1P53564 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cux1P53564 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
Cux1P53564 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cux1P53564 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cux1P53564 Gm12500-202ENSMUST00000186471 2428 ntBASIC21.02■□□□□ 0.96
Cux1P53564 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cux1P53564 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Cux1P53564 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Cux1P53564 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Cux1P53564 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Cux1P53564 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Cux1P53564 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Cux1P53564 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Cux1P53564 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Cux1P53564 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cux1P53564 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
Cux1P53564 AC132384.14-201ENSMUST00000219346 1147 ntBASIC21.02■□□□□ 0.96
Cux1P53564 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Cux1P53564 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC21.02■□□□□ 0.96
Cux1P53564 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
Cux1P53564 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC21.02■□□□□ 0.95
Cux1P53564 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Cux1P53564 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC21.01■□□□□ 0.95
Cux1P53564 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Gm11978-201ENSMUST00000122315 466 ntBASIC21.01■□□□□ 0.95
Cux1P53564 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC21.01■□□□□ 0.95
Cux1P53564 Gm28693-202ENSMUST00000190758 331 ntBASIC21.01■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms