Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
RaraP11416 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
RaraP11416 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.04■□□□□ -0
RaraP11416 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Gm25287-201ENSMUST00000103846 110 ntBASIC15.04■□□□□ -0
RaraP11416 Gm22918-201ENSMUST00000103855 110 ntBASIC15.04■□□□□ -0
RaraP11416 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC15.04■□□□□ -0
RaraP11416 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.04■□□□□ -0
RaraP11416 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.04■□□□□ -0
RaraP11416 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC15.04■□□□□ -0
RaraP11416 Gm44335-201ENSMUST00000196879 141 ntBASIC15.04■□□□□ -0
RaraP11416 Gm44297-201ENSMUST00000198304 141 ntBASIC15.04■□□□□ -0
RaraP11416 Gm44346-201ENSMUST00000198851 141 ntBASIC15.04■□□□□ -0
RaraP11416 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Gm18027-201ENSMUST00000218947 619 ntBASIC15.04■□□□□ -0
RaraP11416 Ndufaf2-202ENSMUST00000223734 556 ntBASIC15.04■□□□□ -0
RaraP11416 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RaraP11416 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 AC121805.2-201ENSMUST00000218808 2538 ntBASIC15.04■□□□□ -0
RaraP11416 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RaraP11416 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 AC159196.2-201ENSMUST00000224082 1622 ntBASIC15.03■□□□□ -0
RaraP11416 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Gm43364-201ENSMUST00000196046 3274 ntBASIC15.03■□□□□ -0
RaraP11416 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Gm9824-201ENSMUST00000178707 561 ntBASIC15.03■□□□□ -0
RaraP11416 Gm43514-201ENSMUST00000198852 424 ntBASIC15.03■□□□□ -0
RaraP11416 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC15.03■□□□□ -0
RaraP11416 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
RaraP11416 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RaraP11416 Gm44065-201ENSMUST00000203184 3527 ntBASIC15.03■□□□□ -0
RaraP11416 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
RaraP11416 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Gm10729-202ENSMUST00000193403 1375 ntBASIC15.02■□□□□ -0
RaraP11416 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC15.02■□□□□ -0
RaraP11416 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC15.02■□□□□ -0
RaraP11416 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
RaraP11416 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC15.02■□□□□ -0
RaraP11416 Gm12428-201ENSMUST00000119844 727 ntBASIC15.02■□□□□ -0
RaraP11416 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Gm9719-201ENSMUST00000162765 543 ntBASIC15.02■□□□□ -0
RaraP11416 Gm29741-201ENSMUST00000192667 421 ntBASIC15.02■□□□□ -0
RaraP11416 Gm43474-201ENSMUST00000196415 774 ntBASIC15.02■□□□□ -0
RaraP11416 Gm43073-201ENSMUST00000198200 1189 ntBASIC15.02■□□□□ -0
RaraP11416 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC15.02■□□□□ -0
RaraP11416 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RaraP11416 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RaraP11416 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
RaraP11416 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
RaraP11416 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms