Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Col1a1P11087 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col1a1P11087 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col1a1P11087 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Col1a1P11087 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col1a1P11087 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col1a1P11087 Gm18244-201ENSMUST00000219747 1566 ntBASIC16.08■□□□□ 0.16
Col1a1P11087 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col1a1P11087 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Col1a1P11087 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
Col1a1P11087 CT573034.1-201ENSMUST00000222983 313 ntBASIC16.08■□□□□ 0.16
Col1a1P11087 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Col1a1P11087 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC16.08■□□□□ 0.16
Col1a1P11087 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Col1a1P11087 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Col1a1P11087 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Gm44981-201ENSMUST00000205549 1943 ntBASIC16.07■□□□□ 0.16
Col1a1P11087 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC16.07■□□□□ 0.16
Col1a1P11087 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC16.07■□□□□ 0.16
Col1a1P11087 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Col1a1P11087 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
Col1a1P11087 Gm12749-201ENSMUST00000122138 1159 ntBASIC16.07■□□□□ 0.16
Col1a1P11087 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
Col1a1P11087 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC16.07■□□□□ 0.16
Col1a1P11087 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Col1a1P11087 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC16.07■□□□□ 0.16
Col1a1P11087 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Col1a1P11087 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Col1a1P11087 Gm6222-202ENSMUST00000182143 629 ntBASIC16.07■□□□□ 0.16
Col1a1P11087 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC16.07■□□□□ 0.16
Col1a1P11087 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Col1a1P11087 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Col1a1P11087 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Col1a1P11087 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Col1a1P11087 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Col1a1P11087 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Col1a1P11087 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Gm13297-201ENSMUST00000120205 934 ntBASIC16.06■□□□□ 0.16
Col1a1P11087 Gm20482-202ENSMUST00000174729 825 ntBASIC16.06■□□□□ 0.16
Col1a1P11087 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 AC132384.14-201ENSMUST00000219346 1147 ntBASIC16.06■□□□□ 0.16
Col1a1P11087 Mir433-201ENSMUST00000093564 124 ntBASIC16.06■□□□□ 0.16
Col1a1P11087 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC16.06■□□□□ 0.16
Col1a1P11087 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Col1a1P11087 Abhd6-203ENSMUST00000225234 1958 ntBASIC16.05■□□□□ 0.16
Col1a1P11087 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Col1a1P11087 Gm4986-201ENSMUST00000119731 549 ntBASIC16.05■□□□□ 0.16
Col1a1P11087 Gm9431-201ENSMUST00000119765 1051 ntBASIC16.05■□□□□ 0.16
Col1a1P11087 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC16.05■□□□□ 0.16
Col1a1P11087 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Col1a1P11087 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC16.05■□□□□ 0.16
Col1a1P11087 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC16.05■□□□□ 0.16
Col1a1P11087 AC134254.1-201ENSMUST00000221362 167 ntBASIC16.05■□□□□ 0.16
Col1a1P11087 AC173210.1-201ENSMUST00000222341 1131 ntBASIC16.05■□□□□ 0.16
Col1a1P11087 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Col1a1P11087 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Col1a1P11087 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col1a1P11087 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms