Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Gm45630-201ENSMUST00000210243 1911 ntBASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Gm12882-201ENSMUST00000121696 517 ntBASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Chmp6P0C0A3 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Matn2-206ENSMUST00000228570 2798 ntBASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Gm38197-201ENSMUST00000192320 2122 ntBASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Gm12151-201ENSMUST00000121374 290 ntBASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 AC102291.3-201ENSMUST00000226566 405 ntBASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 BC001981-202ENSMUST00000191393 1545 ntBASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC15.16■□□□□ 0.02
Chmp6P0C0A3 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Gm27989-201ENSMUST00000184721 107 ntBASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Mir7023-201ENSMUST00000185093 64 ntBASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 AC158982.1-201ENSMUST00000228377 901 ntBASIC15.15■□□□□ 0.02
Chmp6P0C0A3 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Gm5320-201ENSMUST00000207163 1519 ntBASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chmp6P0C0A3 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms