Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Smarce1O54941 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Smarce1O54941 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC16.53■□□□□ 0.24
Smarce1O54941 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Smarce1O54941 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC16.53■□□□□ 0.24
Smarce1O54941 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Gm29741-201ENSMUST00000192667 421 ntBASIC16.53■□□□□ 0.24
Smarce1O54941 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC16.53■□□□□ 0.24
Smarce1O54941 AC149294.4-201ENSMUST00000227870 882 ntBASIC16.53■□□□□ 0.24
Smarce1O54941 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC16.53■□□□□ 0.24
Smarce1O54941 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Smarce1O54941 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Smarce1O54941 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC16.53■□□□□ 0.24
Smarce1O54941 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC16.53■□□□□ 0.24
Smarce1O54941 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Smarce1O54941 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Smarce1O54941 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Smarce1O54941 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Smarce1O54941 Gm6018-201ENSMUST00000216090 1306 ntBASIC16.52■□□□□ 0.24
Smarce1O54941 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Smarce1O54941 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC16.52■□□□□ 0.24
Smarce1O54941 Gm11779-201ENSMUST00000118541 368 ntBASIC16.52■□□□□ 0.24
Smarce1O54941 Gm18041-201ENSMUST00000218210 618 ntBASIC16.52■□□□□ 0.24
Smarce1O54941 AC149588.3-201ENSMUST00000227515 150 ntBASIC16.52■□□□□ 0.24
Smarce1O54941 AC131710.1-201ENSMUST00000228336 990 ntBASIC16.52■□□□□ 0.24
Smarce1O54941 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Smarce1O54941 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Smarce1O54941 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Smarce1O54941 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Smarce1O54941 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC16.52■□□□□ 0.23
Smarce1O54941 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Smarce1O54941 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Smarce1O54941 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Smarce1O54941 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Smarce1O54941 Gm14752-201ENSMUST00000120719 2075 ntBASIC16.52■□□□□ 0.23
Smarce1O54941 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Smarce1O54941 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC16.52■□□□□ 0.23
Smarce1O54941 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Smarce1O54941 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Smarce1O54941 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Smarce1O54941 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Gm38197-201ENSMUST00000192320 2122 ntBASIC16.51■□□□□ 0.23
Smarce1O54941 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Smarce1O54941 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
Smarce1O54941 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Mir1895-201ENSMUST00000122615 79 ntBASIC16.51■□□□□ 0.23
Smarce1O54941 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC16.51■□□□□ 0.23
Smarce1O54941 Gm9824-201ENSMUST00000178707 561 ntBASIC16.51■□□□□ 0.23
Smarce1O54941 Gm27631-201ENSMUST00000184163 466 ntBASIC16.51■□□□□ 0.23
Smarce1O54941 Gm27494-201ENSMUST00000184735 189 ntBASIC16.51■□□□□ 0.23
Smarce1O54941 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC16.51■□□□□ 0.23
Smarce1O54941 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Smarce1O54941 AC155252.2-201ENSMUST00000226946 680 ntBASIC16.51■□□□□ 0.23
Smarce1O54941 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Mir125a-201ENSMUST00000083545 68 ntBASIC16.51■□□□□ 0.23
Smarce1O54941 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Smarce1O54941 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Smarce1O54941 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Smarce1O54941 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Smarce1O54941 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Smarce1O54941 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Smarce1O54941 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Smarce1O54941 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Smarce1O54941 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Smarce1O54941 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Smarce1O54941 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms