Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Gm5896-201ENSMUST00000189662 1024 ntBASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Gm43598-201ENSMUST00000202482 2479 ntBASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hfm1D3Z4R1 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Gm24830-201ENSMUST00000102024 166 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Gm8805-201ENSMUST00000117848 313 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Gm25890-201ENSMUST00000177643 165 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Rnu1b2-201ENSMUST00000178073 165 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Rnu1b1-201ENSMUST00000178250 165 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Gm22614-201ENSMUST00000178300 165 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Gm22042-201ENSMUST00000082989 165 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Gm26232-201ENSMUST00000083360 166 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Gm24136-201ENSMUST00000083374 165 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Rnu1b6-201ENSMUST00000083839 166 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Gm26110-201ENSMUST00000083971 165 ntBASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Hfm1D3Z4R1 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 AC096628.2-201ENSMUST00000225443 1413 ntBASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gm13316-201ENSMUST00000140537 691 ntBASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gm24990-201ENSMUST00000157406 323 ntBASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gm28693-202ENSMUST00000190758 331 ntBASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gm38049-201ENSMUST00000195698 1372 ntBASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gm43423-201ENSMUST00000198390 2094 ntBASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gm18584-201ENSMUST00000203098 964 ntBASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gm4768-201ENSMUST00000206199 686 ntBASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hfm1D3Z4R1 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms