Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Gm27618-201ENSMUST00000183671 60 ntBASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Gm28630-201ENSMUST00000187806 498 ntBASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 AC126408.1-201ENSMUST00000225184 523 ntBASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Gm6198-201ENSMUST00000191337 2929 ntBASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim3Q9R1R2 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Gm8410-201ENSMUST00000117225 605 ntBASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Gm25144-201ENSMUST00000179561 110 ntBASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Gm25352-201ENSMUST00000179815 110 ntBASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim3Q9R1R2 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 64.1 ms