Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Lima1Q9ERG0 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Lima1Q9ERG0 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Lima1Q9ERG0 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Lima1Q9ERG0 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Lima1Q9ERG0 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Lima1Q9ERG0 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Gm15483-201ENSMUST00000120338 456 ntBASIC13.77□□□□□ -0.21
Lima1Q9ERG0 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Gm8000-201ENSMUST00000188378 592 ntBASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Gm37133-201ENSMUST00000192705 1922 ntBASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Lima1Q9ERG0 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Gm43332-201ENSMUST00000202511 1044 ntBASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Gm9182-201ENSMUST00000217829 639 ntBASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Gm18041-201ENSMUST00000218210 618 ntBASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Gm37795-201ENSMUST00000194216 2459 ntBASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
Lima1Q9ERG0 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC13.75□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms