Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Gm37714-201ENSMUST00000194742 342 ntBASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 AC154846.1-201ENSMUST00000226278 862 ntBASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Gm6159-201ENSMUST00000191249 1724 ntBASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Gm37411-201ENSMUST00000194180 2282 ntBASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Gm10710-201ENSMUST00000047876 3971 ntBASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.28□□□□□ -0.12
Vps28Q9D1C8 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Gm18027-201ENSMUST00000218947 619 ntBASIC14.28□□□□□ -0.12
Vps28Q9D1C8 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 AC165157.4-201ENSMUST00000220587 139 ntBASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vps28Q9D1C8 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Vps28Q9D1C8 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vps28Q9D1C8 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vps28Q9D1C8 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vps28Q9D1C8 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Vps28Q9D1C8 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Vps28Q9D1C8 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Vps28Q9D1C8 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC14.27□□□□□ -0.12
Vps28Q9D1C8 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Vps28Q9D1C8 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Vps28Q9D1C8 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms