Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Proscos-202ENSMUST00000178990 666 ntBASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Gm5850-201ENSMUST00000192923 1206 ntBASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Gm7118-201ENSMUST00000200167 1003 ntBASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Gm45865-201ENSMUST00000211815 945 ntBASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Col6a6Q8C6K9 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Ssr1-204ENSMUST00000225319 1610 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm29705-201ENSMUST00000212598 474 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm11557-201ENSMUST00000120200 1008 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm13385-201ENSMUST00000121089 220 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm8927-201ENSMUST00000181978 981 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm26927-201ENSMUST00000182385 965 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm4857-201ENSMUST00000192718 785 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm37714-201ENSMUST00000194742 342 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm44364-201ENSMUST00000198368 141 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Gm3222-201ENSMUST00000071282 990 ntBASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col6a6Q8C6K9 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a6Q8C6K9 Gm37015-201ENSMUST00000192763 1521 ntBASIC12.52□□□□□ -0.4
Col6a6Q8C6K9 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a6Q8C6K9 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a6Q8C6K9 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC12.52□□□□□ -0.4
Col6a6Q8C6K9 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a6Q8C6K9 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a6Q8C6K9 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a6Q8C6K9 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col6a6Q8C6K9 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms