Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC11.88□□□□□ -0.51
Col8a1Q00780 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Col8a1Q00780 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Col8a1Q00780 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Col8a1Q00780 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Col8a1Q00780 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC11.87□□□□□ -0.51
Col8a1Q00780 Gm15808-201ENSMUST00000119046 604 ntBASIC11.87□□□□□ -0.51
Col8a1Q00780 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC11.87□□□□□ -0.51
Col8a1Q00780 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC11.87□□□□□ -0.51
Col8a1Q00780 Gm29199-201ENSMUST00000187766 775 ntBASIC11.87□□□□□ -0.51
Col8a1Q00780 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC11.87□□□□□ -0.51
Col8a1Q00780 Gm18753-201ENSMUST00000201000 566 ntBASIC11.87□□□□□ -0.51
Col8a1Q00780 AC093022.1-201ENSMUST00000226949 1072 ntBASIC11.87□□□□□ -0.51
Col8a1Q00780 Gm10313-201ENSMUST00000095320 1002 ntBASIC11.87□□□□□ -0.51
Col8a1Q00780 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Col8a1Q00780 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Col8a1Q00780 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col8a1Q00780 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC11.87□□□□□ -0.51
Col8a1Q00780 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm13050-201ENSMUST00000122149 1345 ntBASIC11.86□□□□□ -0.51
Col8a1Q00780 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 BC037039-201ENSMUST00000192003 2205 ntBASIC11.86□□□□□ -0.51
Col8a1Q00780 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC11.86□□□□□ -0.51
Col8a1Q00780 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC11.86□□□□□ -0.51
Col8a1Q00780 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm43094-201ENSMUST00000196549 921 ntBASIC11.86□□□□□ -0.51
Col8a1Q00780 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC11.86□□□□□ -0.51
Col8a1Q00780 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm38671-201ENSMUST00000200573 130 ntBASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm43818-201ENSMUST00000200605 466 ntBASIC11.86□□□□□ -0.51
Col8a1Q00780 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm10012-201ENSMUST00000078252 192 ntBASIC11.86□□□□□ -0.51
Col8a1Q00780 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm3695-201ENSMUST00000087222 1009 ntBASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Gm10676-201ENSMUST00000098778 3221 ntBASIC11.86□□□□□ -0.51
Col8a1Q00780 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col8a1Q00780 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC11.86□□□□□ -0.51
Col8a1Q00780 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Col8a1Q00780 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC11.85□□□□□ -0.51
Col8a1Q00780 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Col8a1Q00780 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms