Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC13.28□□□□□ -0.28
Msx1P13297 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
Msx1P13297 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Msx1P13297 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Nupl1-207ENSMUST00000225311 2475 ntBASIC13.28□□□□□ -0.28
Msx1P13297 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC13.28□□□□□ -0.28
Msx1P13297 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Msx1P13297 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Msx1P13297 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Msx1P13297 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Msx1P13297 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Msx1P13297 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC13.27□□□□□ -0.28
Msx1P13297 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Msx1P13297 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC13.27□□□□□ -0.28
Msx1P13297 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Msx1P13297 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Msx1P13297 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Msx1P13297 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Msx1P13297 Mir6420-201ENSMUST00000185032 102 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm29310-201ENSMUST00000185468 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21825-201ENSMUST00000185728 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm29109-201ENSMUST00000185895 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21896-201ENSMUST00000186520 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21873-201ENSMUST00000186728 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21794-201ENSMUST00000187056 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21880-201ENSMUST00000187275 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21826-201ENSMUST00000187451 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21198-201ENSMUST00000188393 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21749-201ENSMUST00000189343 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21901-201ENSMUST00000189568 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm29424-201ENSMUST00000189716 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm28599-201ENSMUST00000189838 694 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21867-201ENSMUST00000189917 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm29269-201ENSMUST00000190087 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21722-201ENSMUST00000190153 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm28423-201ENSMUST00000190701 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21899-201ENSMUST00000190745 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21910-201ENSMUST00000191163 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21849-201ENSMUST00000191571 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm28678-201ENSMUST00000191593 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm20910-201ENSMUST00000193268 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Gm21871-201ENSMUST00000194621 696 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Msx1P13297 Gm18624-201ENSMUST00000220966 658 ntBASIC13.27□□□□□ -0.29
Msx1P13297 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC13.27□□□□□ -0.29
Msx1P13297 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Msx1P13297 4933400A11Rik-201ENSMUST00000068874 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Msx1P13297 4933400A11Rik-202ENSMUST00000068894 1217 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Msx1P13297 Vmn1r34-201ENSMUST00000074381 930 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Msx1P13297 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Msx1P13297 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Msx1P13297 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Msx1P13297 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Msx1P13297 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
Msx1P13297 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC13.26□□□□□ -0.29
Msx1P13297 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC13.26□□□□□ -0.29
Msx1P13297 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC13.26□□□□□ -0.29
Msx1P13297 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC13.26□□□□□ -0.29
Msx1P13297 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC13.26□□□□□ -0.29
Msx1P13297 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Gm43630-201ENSMUST00000201550 776 ntBASIC13.26□□□□□ -0.29
Msx1P13297 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Msx1P13297 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 AC102291.3-201ENSMUST00000226566 405 ntBASIC13.26□□□□□ -0.29
Msx1P13297 Il2-201ENSMUST00000029275 1144 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Msx1P13297 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Msx1P13297 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Msx1P13297 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms