Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
RaraP11416 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
RaraP11416 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
RaraP11416 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC15.07■□□□□ 0
RaraP11416 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Gm45003-201ENSMUST00000205875 2158 ntBASIC15.07■□□□□ 0
RaraP11416 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.07■□□□□ 0
RaraP11416 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC15.07■□□□□ 0
RaraP11416 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
RaraP11416 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Mir6990-201ENSMUST00000183724 91 ntBASIC15.07■□□□□ 0
RaraP11416 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
RaraP11416 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC15.07■□□□□ 0
RaraP11416 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
RaraP11416 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RaraP11416 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC15.06■□□□□ 0
RaraP11416 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
RaraP11416 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC15.06■□□□□ 0
RaraP11416 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC15.06■□□□□ 0
RaraP11416 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC15.06■□□□□ 0
RaraP11416 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
RaraP11416 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RaraP11416 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC15.06■□□□□ 0
RaraP11416 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC15.06■□□□□ 0
RaraP11416 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC15.05■□□□□ 0
RaraP11416 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RaraP11416 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC15.05■□□□□ 0
RaraP11416 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC15.05■□□□□ 0
RaraP11416 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RaraP11416 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RaraP11416 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC15.05■□□□□ 0
RaraP11416 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RaraP11416 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RaraP11416 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
RaraP11416 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
RaraP11416 Gm5566-201ENSMUST00000116118 459 ntBASIC15.05■□□□□ -0
RaraP11416 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC15.05■□□□□ -0
RaraP11416 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC15.05■□□□□ -0
RaraP11416 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Gm43125-201ENSMUST00000201724 730 ntBASIC15.05■□□□□ -0
RaraP11416 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.05■□□□□ -0
RaraP11416 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Zkscan14-203ENSMUST00000198959 2243 ntBASIC15.05■□□□□ -0
RaraP11416 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RaraP11416 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
RaraP11416 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC15.04■□□□□ -0
RaraP11416 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms