Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Gm7114-201ENSMUST00000190159 1789 ntBASIC13.28□□□□□ -0.28
Lire1P11260 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC13.28□□□□□ -0.28
Lire1P11260 Gm45293-201ENSMUST00000209754 1812 ntBASIC13.28□□□□□ -0.28
Lire1P11260 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC13.28□□□□□ -0.28
Lire1P11260 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Lire1P11260 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC13.28□□□□□ -0.28
Lire1P11260 Gm12017-201ENSMUST00000122453 1003 ntBASIC13.28□□□□□ -0.28
Lire1P11260 Gm18737-201ENSMUST00000173594 937 ntBASIC13.28□□□□□ -0.28
Lire1P11260 Gm24158-201ENSMUST00000175263 71 ntBASIC13.28□□□□□ -0.28
Lire1P11260 Gm7774-201ENSMUST00000200064 533 ntBASIC13.28□□□□□ -0.28
Lire1P11260 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC13.28□□□□□ -0.28
Lire1P11260 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC13.28□□□□□ -0.28
Lire1P11260 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC13.28□□□□□ -0.28
Lire1P11260 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
Lire1P11260 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Gm8242-201ENSMUST00000193029 1420 ntBASIC13.28□□□□□ -0.28
Lire1P11260 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Lire1P11260 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC13.28□□□□□ -0.28
Lire1P11260 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lire1P11260 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lire1P11260 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lire1P11260 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lire1P11260 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Lire1P11260 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lire1P11260 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lire1P11260 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lire1P11260 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lire1P11260 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lire1P11260 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Lire1P11260 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
Lire1P11260 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
Lire1P11260 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
Lire1P11260 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.27□□□□□ -0.29
Lire1P11260 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC13.27□□□□□ -0.29
Lire1P11260 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Lire1P11260 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Lire1P11260 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Lire1P11260 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC13.27□□□□□ -0.29
Lire1P11260 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lire1P11260 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.26□□□□□ -0.29
Lire1P11260 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC13.26□□□□□ -0.29
Lire1P11260 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Lire1P11260 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
Lire1P11260 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC13.26□□□□□ -0.29
Lire1P11260 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC13.26□□□□□ -0.29
Lire1P11260 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC13.26□□□□□ -0.29
Lire1P11260 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC13.26□□□□□ -0.29
Lire1P11260 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC13.26□□□□□ -0.29
Lire1P11260 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC13.26□□□□□ -0.29
Lire1P11260 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lire1P11260 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms