Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Hoxd3P09027 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Hoxd3P09027 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC10.9□□□□□ -0.66
Hoxd3P09027 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Sorbs3-204ENSMUST00000227929 2460 ntBASIC10.9□□□□□ -0.66
Hoxd3P09027 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Csnk1a1-208ENSMUST00000167187 1222 ntTSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
Hoxd3P09027 AC153872.1-201ENSMUST00000199539 128 ntBASIC10.9□□□□□ -0.66
Hoxd3P09027 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Gm44608-201ENSMUST00000206827 855 ntBASIC10.9□□□□□ -0.66
Hoxd3P09027 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 AC165157.4-201ENSMUST00000220587 139 ntBASIC10.9□□□□□ -0.66
Hoxd3P09027 AC154806.6-201ENSMUST00000228192 202 ntBASIC10.9□□□□□ -0.66
Hoxd3P09027 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC10.9□□□□□ -0.66
Hoxd3P09027 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Hoxd3P09027 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC10.9□□□□□ -0.67
Hoxd3P09027 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
Hoxd3P09027 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Hoxd3P09027 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Hoxd3P09027 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Hoxd3P09027 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC10.9□□□□□ -0.67
Hoxd3P09027 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Hoxd3P09027 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
Hoxd3P09027 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Hoxd3P09027 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC10.89□□□□□ -0.67
Hoxd3P09027 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Olfr202-202ENSMUST00000201687 1232 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Gm43974-201ENSMUST00000205080 684 ntBASIC10.89□□□□□ -0.67
Hoxd3P09027 Gm45195-201ENSMUST00000205597 1008 ntBASIC10.89□□□□□ -0.67
Hoxd3P09027 6430710M23Rik-201ENSMUST00000210843 1191 ntBASIC10.89□□□□□ -0.67
Hoxd3P09027 AC154846.1-201ENSMUST00000226278 862 ntBASIC10.89□□□□□ -0.67
Hoxd3P09027 AC154757.2-201ENSMUST00000228885 743 ntBASIC10.89□□□□□ -0.67
Hoxd3P09027 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hoxd3P09027 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Hoxd3P09027 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms