Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC16.57■□□□□ 0.24
Smarce1O54941 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Smarce1O54941 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Smarce1O54941 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Smarce1O54941 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Smarce1O54941 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Smarce1O54941 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Smarce1O54941 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC16.56■□□□□ 0.24
Smarce1O54941 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Gm25925-201ENSMUST00000158314 306 ntBASIC16.56■□□□□ 0.24
Smarce1O54941 Gm3809-201ENSMUST00000180973 1006 ntBASIC16.56■□□□□ 0.24
Smarce1O54941 Gm44719-201ENSMUST00000206404 149 ntBASIC16.56■□□□□ 0.24
Smarce1O54941 Gm18049-201ENSMUST00000208909 581 ntBASIC16.56■□□□□ 0.24
Smarce1O54941 Gm45453-201ENSMUST00000211758 853 ntBASIC16.56■□□□□ 0.24
Smarce1O54941 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC16.56■□□□□ 0.24
Smarce1O54941 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Smarce1O54941 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Smarce1O54941 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Gm14494-201ENSMUST00000118786 435 ntBASIC16.55■□□□□ 0.24
Smarce1O54941 Gm11745-201ENSMUST00000121669 448 ntBASIC16.55■□□□□ 0.24
Smarce1O54941 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Gm10175-201ENSMUST00000086013 645 ntBASIC16.55■□□□□ 0.24
Smarce1O54941 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
Smarce1O54941 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
Smarce1O54941 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Smarce1O54941 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Smarce1O54941 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC16.55■□□□□ 0.24
Smarce1O54941 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Smarce1O54941 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Smarce1O54941 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC16.54■□□□□ 0.24
Smarce1O54941 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC16.54■□□□□ 0.24
Smarce1O54941 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.54■□□□□ 0.24
Smarce1O54941 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC16.54■□□□□ 0.24
Smarce1O54941 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC16.54■□□□□ 0.24
Smarce1O54941 Gm43073-201ENSMUST00000198200 1189 ntBASIC16.54■□□□□ 0.24
Smarce1O54941 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.54■□□□□ 0.24
Smarce1O54941 Gm18027-201ENSMUST00000218947 619 ntBASIC16.54■□□□□ 0.24
Smarce1O54941 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.54■□□□□ 0.24
Smarce1O54941 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Smarce1O54941 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Smarce1O54941 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Smarce1O54941 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
Smarce1O54941 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Gm14371-201ENSMUST00000138925 1518 ntBASIC16.54■□□□□ 0.24
Smarce1O54941 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Smarce1O54941 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms