Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC13.62□□□□□ -0.23
Chd3B1AR17 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC13.62□□□□□ -0.23
Chd3B1AR17 Gm37917-201ENSMUST00000194711 392 ntBASIC13.62□□□□□ -0.23
Chd3B1AR17 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Chd3B1AR17 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Chd3B1AR17 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC13.62□□□□□ -0.23
Chd3B1AR17 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
Chd3B1AR17 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC13.62□□□□□ -0.23
Chd3B1AR17 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Chd3B1AR17 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC13.62□□□□□ -0.23
Chd3B1AR17 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC13.62□□□□□ -0.23
Chd3B1AR17 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC13.62□□□□□ -0.23
Chd3B1AR17 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Chd3B1AR17 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Chd3B1AR17 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
Chd3B1AR17 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Chd3B1AR17 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Gm24420-201ENSMUST00000176676 59 ntBASIC13.6□□□□□ -0.23
Chd3B1AR17 AY702102-202ENSMUST00000194651 1173 ntBASIC13.6□□□□□ -0.23
Chd3B1AR17 AC125350.2-201ENSMUST00000224737 727 ntBASIC13.6□□□□□ -0.23
Chd3B1AR17 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC13.6□□□□□ -0.23
Chd3B1AR17 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Sorbs3-204ENSMUST00000227929 2460 ntBASIC13.6□□□□□ -0.23
Chd3B1AR17 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC13.6□□□□□ -0.23
Chd3B1AR17 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
Chd3B1AR17 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC13.6□□□□□ -0.23
Chd3B1AR17 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Chd3B1AR17 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Chd3B1AR17 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms