Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim3Q9R1R2 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Acot6-202ENSMUST00000222921 3622 ntBASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC13.16□□□□□ -0.3
Trim3Q9R1R2 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm13823-201ENSMUST00000119930 345 ntBASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm10576-201ENSMUST00000191927 825 ntBASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm37277-201ENSMUST00000194052 1111 ntBASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim3Q9R1R2 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
Trim3Q9R1R2 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim3Q9R1R2 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms