Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC13.2□□□□□ -0.3
Clrn1Q8K445 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC13.2□□□□□ -0.3
Clrn1Q8K445 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC13.2□□□□□ -0.3
Clrn1Q8K445 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC13.2□□□□□ -0.3
Clrn1Q8K445 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC13.2□□□□□ -0.3
Clrn1Q8K445 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC13.2□□□□□ -0.3
Clrn1Q8K445 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Gm46209-201ENSMUST00000217912 553 ntBASIC13.2□□□□□ -0.3
Clrn1Q8K445 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Clrn1Q8K445 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Gm12428-201ENSMUST00000119844 727 ntBASIC13.19□□□□□ -0.3
Clrn1Q8K445 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 AC139350.3-201ENSMUST00000226151 420 ntBASIC13.19□□□□□ -0.3
Clrn1Q8K445 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Clrn1Q8K445 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC13.18□□□□□ -0.3
Clrn1Q8K445 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Gm33320-201ENSMUST00000192232 530 ntBASIC13.18□□□□□ -0.3
Clrn1Q8K445 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC13.18□□□□□ -0.3
Clrn1Q8K445 Gm44344-201ENSMUST00000200287 129 ntBASIC13.18□□□□□ -0.3
Clrn1Q8K445 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Gm18027-201ENSMUST00000218947 619 ntBASIC13.18□□□□□ -0.3
Clrn1Q8K445 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC13.18□□□□□ -0.3
Clrn1Q8K445 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Clrn1Q8K445 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms