Protein–RNA interactions for Protein: Q8BGE6

Atg4b, Cysteine protease ATG4B, mousemouse

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4bQ8BGE6 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Gm42471-201ENSMUST00000201457 1865 ntBASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Gm7775-201ENSMUST00000218871 853 ntBASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Atg4bQ8BGE6 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Gm7820-201ENSMUST00000121012 1052 ntBASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Gm27306-201ENSMUST00000183970 107 ntBASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Atg4bQ8BGE6 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 AC114543.1-201ENSMUST00000226451 1558 ntBASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Gm3436-201ENSMUST00000179930 840 ntBASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Gm21470-201ENSMUST00000187680 696 ntBASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 AC153872.1-201ENSMUST00000199539 128 ntBASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Atg4bQ8BGE6 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms