Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Gm12151-201ENSMUST00000121374 290 ntBASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Gm21470-201ENSMUST00000187680 696 ntBASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Upf3bQ3ULL6 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
Upf3bQ3ULL6 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Gm12585-201ENSMUST00000117307 290 ntBASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Mir8102-201ENSMUST00000184148 139 ntBASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3bQ3ULL6 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 AC114543.1-201ENSMUST00000226451 1558 ntBASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Gm4875-201ENSMUST00000118257 786 ntBASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Gm20949-201ENSMUST00000206478 952 ntBASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 AC154621.1-201ENSMUST00000226155 1119 ntBASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 CT030704.2-201ENSMUST00000228887 494 ntBASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3bQ3ULL6 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Gm26513-201ENSMUST00000181802 2489 ntBASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Auts2-212ENSMUST00000178555 309 ntBASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Mir7684-201ENSMUST00000183858 60 ntBASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms