Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Cux1P53564 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cux1P53564 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Cux1P53564 Gm3756-201ENSMUST00000169182 1355 ntBASIC21.13■□□□□ 0.97
Cux1P53564 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC21.13■□□□□ 0.97
Cux1P53564 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Cux1P53564 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Cux1P53564 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Cux1P53564 Gm11591-201ENSMUST00000120063 702 ntBASIC21.13■□□□□ 0.97
Cux1P53564 AC159747.1-201ENSMUST00000219903 265 ntBASIC21.13■□□□□ 0.97
Cux1P53564 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC21.13■□□□□ 0.97
Cux1P53564 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cux1P53564 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC21.12■□□□□ 0.97
Cux1P53564 Gm6447-201ENSMUST00000118905 835 ntBASIC21.12■□□□□ 0.97
Cux1P53564 Gm3890-201ENSMUST00000182416 207 ntBASIC21.12■□□□□ 0.97
Cux1P53564 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC21.12■□□□□ 0.97
Cux1P53564 Gm44069-201ENSMUST00000204898 506 ntBASIC21.12■□□□□ 0.97
Cux1P53564 Gm18935-201ENSMUST00000212692 664 ntBASIC21.12■□□□□ 0.97
Cux1P53564 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC21.12■□□□□ 0.97
Cux1P53564 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC21.12■□□□□ 0.97
Cux1P53564 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC21.12■□□□□ 0.97
Cux1P53564 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cux1P53564 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Cux1P53564 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
Cux1P53564 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
Cux1P53564 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Cux1P53564 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Cux1P53564 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cux1P53564 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC21.11■□□□□ 0.97
Cux1P53564 Gm12363-201ENSMUST00000122250 668 ntBASIC21.11■□□□□ 0.97
Cux1P53564 Gm7809-201ENSMUST00000153199 742 ntBASIC21.11■□□□□ 0.97
Cux1P53564 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cux1P53564 AC134254.1-201ENSMUST00000221362 167 ntBASIC21.11■□□□□ 0.97
Cux1P53564 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cux1P53564 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Cux1P53564 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC21.11■□□□□ 0.97
Cux1P53564 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cux1P53564 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cux1P53564 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cux1P53564 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cux1P53564 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
Cux1P53564 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC21.1■□□□□ 0.97
Cux1P53564 Gm6023-201ENSMUST00000118217 606 ntBASIC21.1■□□□□ 0.97
Cux1P53564 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Cux1P53564 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Cux1P53564 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Cux1P53564 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
Cux1P53564 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Cux1P53564 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Cux1P53564 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cux1P53564 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC21.09■□□□□ 0.97
Cux1P53564 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC21.09■□□□□ 0.97
Cux1P53564 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
Cux1P53564 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC21.09■□□□□ 0.97
Cux1P53564 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Cux1P53564 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Cux1P53564 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Cux1P53564 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms