Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Shmt1P50431 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Shmt1P50431 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.76□□□□□ -0.05
Shmt1P50431 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Shmt1P50431 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Shmt1P50431 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Shmt1P50431 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Shmt1P50431 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Shmt1P50431 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Shmt1P50431 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Shmt1P50431 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
Shmt1P50431 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Shmt1P50431 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Shmt1P50431 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Shmt1P50431 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Shmt1P50431 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Shmt1P50431 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Gm14928-201ENSMUST00000120198 477 ntBASIC14.75□□□□□ -0.05
Shmt1P50431 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Shmt1P50431 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC14.75□□□□□ -0.05
Shmt1P50431 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC14.75□□□□□ -0.05
Shmt1P50431 Gm9794-201ENSMUST00000202370 423 ntBASIC14.75□□□□□ -0.05
Shmt1P50431 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC14.75□□□□□ -0.05
Shmt1P50431 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
Shmt1P50431 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Shmt1P50431 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
Shmt1P50431 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Shmt1P50431 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Shmt1P50431 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Shmt1P50431 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC14.74□□□□□ -0.05
Shmt1P50431 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.74□□□□□ -0.05
Shmt1P50431 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC14.74□□□□□ -0.05
Shmt1P50431 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Gm6912-201ENSMUST00000117218 544 ntBASIC14.74□□□□□ -0.05
Shmt1P50431 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC14.74□□□□□ -0.05
Shmt1P50431 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC14.74□□□□□ -0.05
Shmt1P50431 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC14.74□□□□□ -0.05
Shmt1P50431 Gm29741-201ENSMUST00000192667 421 ntBASIC14.74□□□□□ -0.05
Shmt1P50431 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC14.74□□□□□ -0.05
Shmt1P50431 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC14.74□□□□□ -0.05
Shmt1P50431 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Shmt1P50431 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Shmt1P50431 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Shmt1P50431 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Shmt1P50431 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Gm28182-201ENSMUST00000188354 2477 ntBASIC14.74□□□□□ -0.05
Shmt1P50431 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC14.74□□□□□ -0.05
Shmt1P50431 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Shmt1P50431 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Shmt1P50431 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.73□□□□□ -0.05
Shmt1P50431 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Shmt1P50431 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC14.73□□□□□ -0.05
Shmt1P50431 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Shmt1P50431 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Shmt1P50431 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Shmt1P50431 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Shmt1P50431 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
Shmt1P50431 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Shmt1P50431 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Shmt1P50431 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Shmt1P50431 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Shmt1P50431 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms