Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Msx1P13297 Gm9522-201ENSMUST00000182394 926 ntBASIC13.3□□□□□ -0.28
Msx1P13297 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Gm43692-201ENSMUST00000198236 1062 ntBASIC13.3□□□□□ -0.28
Msx1P13297 Gm6007-201ENSMUST00000208170 823 ntBASIC13.3□□□□□ -0.28
Msx1P13297 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
Msx1P13297 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Msx1P13297 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Msx1P13297 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Msx1P13297 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Gm45630-201ENSMUST00000210243 1911 ntBASIC13.29□□□□□ -0.28
Msx1P13297 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Msx1P13297 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Gm14399-202ENSMUST00000108929 813 ntTSL 5 BASIC13.29□□□□□ -0.28
Msx1P13297 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC13.29□□□□□ -0.28
Msx1P13297 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC13.29□□□□□ -0.28
Msx1P13297 Gm6222-201ENSMUST00000120787 396 ntBASIC13.29□□□□□ -0.28
Msx1P13297 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Tbata-209ENSMUST00000148181 1017 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Gm38216-201ENSMUST00000194872 1214 ntBASIC13.29□□□□□ -0.28
Msx1P13297 Gm6266-201ENSMUST00000203844 806 ntBASIC13.29□□□□□ -0.28
Msx1P13297 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC13.29□□□□□ -0.28
Msx1P13297 AC123645.1-201ENSMUST00000228469 605 ntBASIC13.29□□□□□ -0.28
Msx1P13297 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC13.29□□□□□ -0.28
Msx1P13297 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC13.29□□□□□ -0.28
Msx1P13297 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Msx1P13297 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
Msx1P13297 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Msx1P13297 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Sorbs3-204ENSMUST00000227929 2460 ntBASIC13.29□□□□□ -0.28
Msx1P13297 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Msx1P13297 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Msx1P13297 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Msx1P13297 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 AC167013.2-201ENSMUST00000228520 2684 ntBASIC13.28□□□□□ -0.28
Msx1P13297 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC13.28□□□□□ -0.28
Msx1P13297 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC13.28□□□□□ -0.28
Msx1P13297 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Gm11077-201ENSMUST00000111844 84 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Msx1P13297 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Gm11918-201ENSMUST00000121660 179 ntBASIC13.28□□□□□ -0.28
Msx1P13297 Nr6a1os-201ENSMUST00000129089 645 ntTSL 2 BASIC13.28□□□□□ -0.28
Msx1P13297 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 AC154828.2-201ENSMUST00000220908 1070 ntBASIC13.28□□□□□ -0.28
Msx1P13297 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Msx1P13297 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Msx1P13297 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Msx1P13297 Gm42651-201ENSMUST00000199851 1339 ntBASIC13.28□□□□□ -0.28
Msx1P13297 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 68.9 ms