Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Chmp7Q8R1T1 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC28.18■■■□□ 2.1
Chmp7Q8R1T1 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC28.18■■■□□ 2.1
Chmp7Q8R1T1 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Chmp7Q8R1T1 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC28.18■■■□□ 2.1
Chmp7Q8R1T1 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC28.18■■■□□ 2.1
Chmp7Q8R1T1 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Chmp7Q8R1T1 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Chmp7Q8R1T1 Gm28536-201ENSMUST00000190971 1317 ntBASIC28.18■■■□□ 2.1
Chmp7Q8R1T1 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Chmp7Q8R1T1 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
Chmp7Q8R1T1 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Chmp7Q8R1T1 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
Chmp7Q8R1T1 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
Chmp7Q8R1T1 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Chmp7Q8R1T1 Gm42699-201ENSMUST00000198104 1657 ntBASIC28.16■■■□□ 2.1
Chmp7Q8R1T1 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC28.16■■■□□ 2.1
Chmp7Q8R1T1 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC28.16■■■□□ 2.1
Chmp7Q8R1T1 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC28.16■■■□□ 2.1
Chmp7Q8R1T1 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC28.16■■■□□ 2.1
Chmp7Q8R1T1 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Chmp7Q8R1T1 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
Chmp7Q8R1T1 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Chmp7Q8R1T1 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
Chmp7Q8R1T1 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC28.15■■■□□ 2.1
Chmp7Q8R1T1 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Chmp7Q8R1T1 Gm7417-201ENSMUST00000192950 473 ntBASIC28.15■■■□□ 2.1
Chmp7Q8R1T1 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Chmp7Q8R1T1 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
Chmp7Q8R1T1 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Chmp7Q8R1T1 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
Chmp7Q8R1T1 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC28.14■■■□□ 2.1
Chmp7Q8R1T1 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Chmp7Q8R1T1 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Chmp7Q8R1T1 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC28.12■■■□□ 2.09
Chmp7Q8R1T1 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
Chmp7Q8R1T1 AC117245.4-201ENSMUST00000217388 1646 ntBASIC28.11■■■□□ 2.09
Chmp7Q8R1T1 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC28.11■■■□□ 2.09
Chmp7Q8R1T1 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
Chmp7Q8R1T1 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Chmp7Q8R1T1 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Chmp7Q8R1T1 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
Chmp7Q8R1T1 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Chmp7Q8R1T1 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Chmp7Q8R1T1 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC28.1■■■□□ 2.09
Chmp7Q8R1T1 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC28.1■■■□□ 2.09
Chmp7Q8R1T1 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Chmp7Q8R1T1 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Chmp7Q8R1T1 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
Chmp7Q8R1T1 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Chmp7Q8R1T1 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC28.08■■■□□ 2.09
Chmp7Q8R1T1 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Chmp7Q8R1T1 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Chmp7Q8R1T1 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
Chmp7Q8R1T1 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC28.07■■■□□ 2.08
Chmp7Q8R1T1 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
Chmp7Q8R1T1 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Chmp7Q8R1T1 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC28.07■■■□□ 2.08
Chmp7Q8R1T1 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Chmp7Q8R1T1 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC28.06■■■□□ 2.08
Chmp7Q8R1T1 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC28.06■■■□□ 2.08
Chmp7Q8R1T1 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
Chmp7Q8R1T1 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
Chmp7Q8R1T1 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC28.05■■■□□ 2.08
Chmp7Q8R1T1 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Chmp7Q8R1T1 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Chmp7Q8R1T1 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Chmp7Q8R1T1 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Chmp7Q8R1T1 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
Chmp7Q8R1T1 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC28.04■■■□□ 2.08
Chmp7Q8R1T1 Nsd1-206ENSMUST00000224918 1001 ntBASIC28.04■■■□□ 2.08
Chmp7Q8R1T1 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC28.04■■■□□ 2.08
Chmp7Q8R1T1 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
Chmp7Q8R1T1 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Chmp7Q8R1T1 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC28.03■■■□□ 2.08
Chmp7Q8R1T1 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Chmp7Q8R1T1 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Chmp7Q8R1T1 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Chmp7Q8R1T1 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC28.02■■■□□ 2.08
Chmp7Q8R1T1 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC28.02■■■□□ 2.08
Chmp7Q8R1T1 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
Chmp7Q8R1T1 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Chmp7Q8R1T1 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
Chmp7Q8R1T1 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Chmp7Q8R1T1 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Chmp7Q8R1T1 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC28■■■□□ 2.07
Chmp7Q8R1T1 Gm11847-201ENSMUST00000125165 1119 ntBASIC28■■■□□ 2.07
Chmp7Q8R1T1 Gm40881-201ENSMUST00000223397 166 ntBASIC28■■■□□ 2.07
Chmp7Q8R1T1 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Chmp7Q8R1T1 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC28■■■□□ 2.07
Chmp7Q8R1T1 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Chmp7Q8R1T1 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Chmp7Q8R1T1 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Chmp7Q8R1T1 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Chmp7Q8R1T1 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
Chmp7Q8R1T1 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC27.98■■■□□ 2.07
Chmp7Q8R1T1 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Chmp7Q8R1T1 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC27.97■■■□□ 2.07
Chmp7Q8R1T1 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Chmp7Q8R1T1 Gm28731-201ENSMUST00000185564 1569 ntBASIC27.97■■■□□ 2.07
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms