Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb3O54879 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC18.07■□□□□ 0.48
Hmgb3O54879 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb3O54879 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb3O54879 Zfp131-205ENSMUST00000223812 663 ntBASIC18.07■□□□□ 0.48
Hmgb3O54879 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Hmgb3O54879 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb3O54879 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Hmgb3O54879 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb3O54879 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb3O54879 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.06■□□□□ 0.48
Hmgb3O54879 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb3O54879 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb3O54879 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb3O54879 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
Hmgb3O54879 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC18.05■□□□□ 0.48
Hmgb3O54879 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb3O54879 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC18.05■□□□□ 0.48
Hmgb3O54879 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb3O54879 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Hmgb3O54879 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Hmgb3O54879 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb3O54879 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb3O54879 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb3O54879 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb3O54879 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb3O54879 Gm38160-201ENSMUST00000193090 2499 ntBASIC18.04■□□□□ 0.48
Hmgb3O54879 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb3O54879 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb3O54879 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Hmgb3O54879 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
Hmgb3O54879 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb3O54879 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Hmgb3O54879 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb3O54879 Gm13042-201ENSMUST00000119244 1955 ntBASIC18.03■□□□□ 0.48
Hmgb3O54879 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb3O54879 Gm24970-201ENSMUST00000175582 82 ntBASIC18.03■□□□□ 0.48
Hmgb3O54879 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Hmgb3O54879 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Hmgb3O54879 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb3O54879 Gm9397-201ENSMUST00000200125 605 ntBASIC18.02■□□□□ 0.48
Hmgb3O54879 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC18.02■□□□□ 0.48
Hmgb3O54879 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Hmgb3O54879 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Hmgb3O54879 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb3O54879 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Hmgb3O54879 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Hmgb3O54879 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb3O54879 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb3O54879 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb3O54879 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb3O54879 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb3O54879 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC18■□□□□ 0.47
Hmgb3O54879 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Hmgb3O54879 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Hmgb3O54879 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb3O54879 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb3O54879 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Hmgb3O54879 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Hmgb3O54879 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb3O54879 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Hmgb3O54879 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb3O54879 Gm4419-202ENSMUST00000226239 1431 ntBASIC17.98■□□□□ 0.47
Hmgb3O54879 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb3O54879 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb3O54879 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb3O54879 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Hmgb3O54879 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Hmgb3O54879 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.97■□□□□ 0.47
Hmgb3O54879 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Hmgb3O54879 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Hmgb3O54879 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Hmgb3O54879 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Hmgb3O54879 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Hmgb3O54879 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Hmgb3O54879 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.96■□□□□ 0.47
Hmgb3O54879 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Hmgb3O54879 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Hmgb3O54879 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Hmgb3O54879 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Hmgb3O54879 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Hmgb3O54879 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Hmgb3O54879 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Hmgb3O54879 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Hmgb3O54879 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Hmgb3O54879 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Hmgb3O54879 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Hmgb3O54879 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC17.95■□□□□ 0.46
Hmgb3O54879 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Hmgb3O54879 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Hmgb3O54879 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Hmgb3O54879 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Hmgb3O54879 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Hmgb3O54879 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Hmgb3O54879 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Hmgb3O54879 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Hmgb3O54879 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
Hmgb3O54879 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
Hmgb3O54879 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.93■□□□□ 0.46
Hmgb3O54879 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 12 ms