Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm44855-201ENSMUST00000205725 362 ntBASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Gm43399-201ENSMUST00000202546 2374 ntBASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cdc40Q9DC48 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Gtpbp10-211ENSMUST00000198799 648 ntBASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Gm7730-201ENSMUST00000212486 454 ntBASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Shd-206ENSMUST00000225145 998 ntBASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cdc40Q9DC48 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
Cdc40Q9DC48 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13□□□□□ -0.33
Cdc40Q9DC48 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cdc40Q9DC48 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC13□□□□□ -0.33
Cdc40Q9DC48 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC13□□□□□ -0.33
Cdc40Q9DC48 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC13□□□□□ -0.33
Cdc40Q9DC48 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC13□□□□□ -0.33
Cdc40Q9DC48 Gm6222-201ENSMUST00000120787 396 ntBASIC13□□□□□ -0.33
Cdc40Q9DC48 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC13□□□□□ -0.33
Cdc40Q9DC48 AC124732.1-201ENSMUST00000221551 910 ntBASIC13□□□□□ -0.33
Cdc40Q9DC48 AC140375.2-201ENSMUST00000225283 584 ntBASIC13□□□□□ -0.33
Cdc40Q9DC48 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC13□□□□□ -0.33
Cdc40Q9DC48 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Nupl1-207ENSMUST00000225311 2475 ntBASIC13□□□□□ -0.33
Cdc40Q9DC48 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cdc40Q9DC48 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdc40Q9DC48 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Cdc40Q9DC48 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
Cdc40Q9DC48 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdc40Q9DC48 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Cdc40Q9DC48 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Cdc40Q9DC48 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdc40Q9DC48 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cdc40Q9DC48 Gm5763-201ENSMUST00000155951 1530 ntBASIC12.99□□□□□ -0.33
Cdc40Q9DC48 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.99□□□□□ -0.33
Cdc40Q9DC48 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms