Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Clp1Q99LI9 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Clp1Q99LI9 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Clp1Q99LI9 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Clp1Q99LI9 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Clp1Q99LI9 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC14.68□□□□□ -0.06
Clp1Q99LI9 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Gm4271-201ENSMUST00000174444 973 ntBASIC14.68□□□□□ -0.06
Clp1Q99LI9 Gm3809-201ENSMUST00000180973 1006 ntBASIC14.68□□□□□ -0.06
Clp1Q99LI9 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC14.68□□□□□ -0.06
Clp1Q99LI9 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Gm5421-201ENSMUST00000181698 2354 ntBASIC14.68□□□□□ -0.06
Clp1Q99LI9 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Clp1Q99LI9 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Clp1Q99LI9 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC14.67□□□□□ -0.06
Clp1Q99LI9 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Gm27682-201ENSMUST00000183930 110 ntBASIC14.67□□□□□ -0.06
Clp1Q99LI9 Mir8109-201ENSMUST00000184375 117 ntBASIC14.67□□□□□ -0.06
Clp1Q99LI9 Gm38002-201ENSMUST00000193255 180 ntBASIC14.67□□□□□ -0.06
Clp1Q99LI9 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Gm9823-201ENSMUST00000051212 327 ntBASIC14.67□□□□□ -0.06
Clp1Q99LI9 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Clp1Q99LI9 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Gm37305-201ENSMUST00000195714 4279 ntBASIC14.66□□□□□ -0.06
Clp1Q99LI9 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Gm1335-201ENSMUST00000121653 386 ntBASIC14.66□□□□□ -0.06
Clp1Q99LI9 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Gm3961-201ENSMUST00000204425 994 ntBASIC14.66□□□□□ -0.06
Clp1Q99LI9 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Itm2b-204ENSMUST00000228637 783 ntBASIC14.66□□□□□ -0.06
Clp1Q99LI9 A430010J10Rik-201ENSMUST00000054470 408 ntBASIC14.66□□□□□ -0.06
Clp1Q99LI9 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Clp1Q99LI9 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms