Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col11a1Q61245 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col11a1Q61245 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col11a1Q61245 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col11a1Q61245 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col11a1Q61245 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC15.35■□□□□ 0.05
Col11a1Q61245 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col11a1Q61245 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Fbxl12-205ENSMUST00000140702 1555 ntBASIC15.34■□□□□ 0.05
Col11a1Q61245 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Gm10434-201ENSMUST00000101158 471 ntBASIC15.34■□□□□ 0.05
Col11a1Q61245 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Gm7857-201ENSMUST00000117957 358 ntBASIC15.34■□□□□ 0.05
Col11a1Q61245 Gm6447-201ENSMUST00000118905 835 ntBASIC15.34■□□□□ 0.05
Col11a1Q61245 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC15.34■□□□□ 0.05
Col11a1Q61245 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Gm37042-201ENSMUST00000193816 581 ntBASIC15.34■□□□□ 0.05
Col11a1Q61245 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col11a1Q61245 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC15.34■□□□□ 0.05
Col11a1Q61245 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC15.33■□□□□ 0.05
Col11a1Q61245 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col11a1Q61245 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC15.33■□□□□ 0.05
Col11a1Q61245 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC15.33■□□□□ 0.05
Col11a1Q61245 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC15.33■□□□□ 0.05
Col11a1Q61245 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col11a1Q61245 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col11a1Q61245 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC15.33■□□□□ 0.05
Col11a1Q61245 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col11a1Q61245 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col11a1Q61245 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Col11a1Q61245 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col11a1Q61245 AC123857.2-201ENSMUST00000225756 1582 ntBASIC15.33■□□□□ 0.05
Col11a1Q61245 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Col11a1Q61245 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Gm2231-201ENSMUST00000125661 612 ntBASIC15.33■□□□□ 0.04
Col11a1Q61245 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Gm38317-201ENSMUST00000195564 343 ntBASIC15.33■□□□□ 0.04
Col11a1Q61245 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Gm44069-201ENSMUST00000204898 506 ntBASIC15.33■□□□□ 0.04
Col11a1Q61245 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC15.33■□□□□ 0.04
Col11a1Q61245 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 AC139054.1-201ENSMUST00000226898 1598 ntBASIC15.33■□□□□ 0.04
Col11a1Q61245 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Gm44645-201ENSMUST00000205492 1653 ntBASIC15.33■□□□□ 0.04
Col11a1Q61245 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col11a1Q61245 AC154412.1-201ENSMUST00000226540 2786 ntBASIC15.32■□□□□ 0.04
Col11a1Q61245 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col11a1Q61245 Snord83b-201ENSMUST00000104546 94 ntBASIC15.32■□□□□ 0.04
Col11a1Q61245 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
Col11a1Q61245 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC15.32■□□□□ 0.04
Col11a1Q61245 Gm14208-201ENSMUST00000119645 678 ntBASIC15.32■□□□□ 0.04
Col11a1Q61245 Gm15782-201ENSMUST00000121073 445 ntBASIC15.32■□□□□ 0.04
Col11a1Q61245 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC15.32■□□□□ 0.04
Col11a1Q61245 Gm22902-201ENSMUST00000158488 302 ntBASIC15.32■□□□□ 0.04
Col11a1Q61245 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Col11a1Q61245 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC15.32■□□□□ 0.04
Col11a1Q61245 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col11a1Q61245 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC15.32■□□□□ 0.04
Col11a1Q61245 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col11a1Q61245 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC15.32■□□□□ 0.04
Col11a1Q61245 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.32■□□□□ 0.04
Col11a1Q61245 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col11a1Q61245 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col11a1Q61245 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col11a1Q61245 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Col11a1Q61245 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col11a1Q61245 Gm38197-201ENSMUST00000192320 2122 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms