Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Gm17795-201ENSMUST00000214505 757 ntBASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Vps54Q5SPW0 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Gm26513-201ENSMUST00000181802 2489 ntBASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC16.77■□□□□ 0.28
Vps54Q5SPW0 H2-Pa-201ENSMUST00000182803 626 ntBASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 AC149294.4-201ENSMUST00000227870 882 ntBASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps54Q5SPW0 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Vps54Q5SPW0 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Vps54Q5SPW0 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Vps54Q5SPW0 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Vps54Q5SPW0 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC16.77■□□□□ 0.27
Vps54Q5SPW0 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Vps54Q5SPW0 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Gm6912-201ENSMUST00000117218 544 ntBASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Gm3809-201ENSMUST00000180973 1006 ntBASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Vps54Q5SPW0 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Gm45760-201ENSMUST00000212190 1782 ntBASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC16.75■□□□□ 0.27
Vps54Q5SPW0 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 76.3 ms