Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Col8a1Q00780 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC11.92□□□□□ -0.5
Col8a1Q00780 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Col8a1Q00780 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC11.92□□□□□ -0.5
Col8a1Q00780 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC11.92□□□□□ -0.5
Col8a1Q00780 Gm21470-201ENSMUST00000187680 696 ntBASIC11.92□□□□□ -0.5
Col8a1Q00780 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC11.92□□□□□ -0.5
Col8a1Q00780 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC11.92□□□□□ -0.5
Col8a1Q00780 Olfr286-202ENSMUST00000205305 969 ntBASIC11.92□□□□□ -0.5
Col8a1Q00780 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC11.92□□□□□ -0.5
Col8a1Q00780 Gm18934-201ENSMUST00000216671 1044 ntBASIC11.92□□□□□ -0.5
Col8a1Q00780 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC11.92□□□□□ -0.5
Col8a1Q00780 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Gm43352-201ENSMUST00000196419 3065 ntBASIC11.91□□□□□ -0.5
Col8a1Q00780 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Gm8749-201ENSMUST00000117737 331 ntBASIC11.91□□□□□ -0.5
Col8a1Q00780 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC11.91□□□□□ -0.5
Col8a1Q00780 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Gm8801-201ENSMUST00000173255 1064 ntBASIC11.91□□□□□ -0.5
Col8a1Q00780 Mir5132-201ENSMUST00000175166 71 ntBASIC11.91□□□□□ -0.5
Col8a1Q00780 Gm42442-201ENSMUST00000197951 1133 ntBASIC11.91□□□□□ -0.5
Col8a1Q00780 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col8a1Q00780 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
Col8a1Q00780 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC11.9□□□□□ -0.5
Col8a1Q00780 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Gm12384-201ENSMUST00000119228 919 ntBASIC11.9□□□□□ -0.5
Col8a1Q00780 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms