Protein–RNA interactions for Protein: P61969

Lmo4, LIM domain transcription factor LMO4, mousemouse

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmo4P61969 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lmo4P61969 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lmo4P61969 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Lmo4P61969 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC11.27□□□□□ -0.61
Lmo4P61969 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC11.27□□□□□ -0.61
Lmo4P61969 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Gm12390-201ENSMUST00000117897 397 ntBASIC11.27□□□□□ -0.61
Lmo4P61969 Gm11814-201ENSMUST00000119515 929 ntBASIC11.27□□□□□ -0.61
Lmo4P61969 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC11.27□□□□□ -0.61
Lmo4P61969 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Lmo4P61969 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Lmo4P61969 Gm38223-201ENSMUST00000194484 695 ntBASIC11.27□□□□□ -0.61
Lmo4P61969 AC125350.2-201ENSMUST00000224737 727 ntBASIC11.27□□□□□ -0.61
Lmo4P61969 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC11.27□□□□□ -0.61
Lmo4P61969 Gm24447-201ENSMUST00000083977 338 ntBASIC11.27□□□□□ -0.61
Lmo4P61969 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC11.27□□□□□ -0.61
Lmo4P61969 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC11.27□□□□□ -0.61
Lmo4P61969 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC11.27□□□□□ -0.61
Lmo4P61969 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lmo4P61969 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC11.26□□□□□ -0.61
Lmo4P61969 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC11.26□□□□□ -0.61
Lmo4P61969 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Lmo4P61969 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC11.26□□□□□ -0.61
Lmo4P61969 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC11.26□□□□□ -0.61
Lmo4P61969 Mir1982-201ENSMUST00000157368 74 ntBASIC11.26□□□□□ -0.61
Lmo4P61969 Gm8652-201ENSMUST00000181363 964 ntBASIC11.26□□□□□ -0.61
Lmo4P61969 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC11.26□□□□□ -0.61
Lmo4P61969 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC11.26□□□□□ -0.61
Lmo4P61969 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Lmo4P61969 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Lmo4P61969 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Lmo4P61969 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Lmo4P61969 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC11.26□□□□□ -0.61
Lmo4P61969 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Lmo4P61969 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Lmo4P61969 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lmo4P61969 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC11.25□□□□□ -0.61
Lmo4P61969 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Lmo4P61969 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Lmo4P61969 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC11.25□□□□□ -0.61
Lmo4P61969 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC11.25□□□□□ -0.61
Lmo4P61969 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC11.25□□□□□ -0.61
Lmo4P61969 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC11.25□□□□□ -0.61
Lmo4P61969 AY702102-202ENSMUST00000194651 1173 ntBASIC11.25□□□□□ -0.61
Lmo4P61969 Gm44397-201ENSMUST00000195950 113 ntBASIC11.25□□□□□ -0.61
Lmo4P61969 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC11.25□□□□□ -0.61
Lmo4P61969 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC11.25□□□□□ -0.61
Lmo4P61969 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lmo4P61969 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms