Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Msx1P13297 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC13.32□□□□□ -0.28
Msx1P13297 2810403D21Rik-206ENSMUST00000151166 1107 ntTSL 3 BASIC13.32□□□□□ -0.28
Msx1P13297 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC13.32□□□□□ -0.28
Msx1P13297 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Msx1P13297 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Msx1P13297 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC13.32□□□□□ -0.28
Msx1P13297 2900076G11Rik-201ENSMUST00000202297 631 ntBASIC13.32□□□□□ -0.28
Msx1P13297 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC13.32□□□□□ -0.28
Msx1P13297 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Gm16476-201ENSMUST00000221544 139 ntBASIC13.32□□□□□ -0.28
Msx1P13297 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC13.32□□□□□ -0.28
Msx1P13297 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC13.32□□□□□ -0.28
Msx1P13297 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
Msx1P13297 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC13.32□□□□□ -0.28
Msx1P13297 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Gm43697-201ENSMUST00000199637 2581 ntBASIC13.31□□□□□ -0.28
Msx1P13297 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Gm14201-201ENSMUST00000117627 289 ntBASIC13.31□□□□□ -0.28
Msx1P13297 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Atp6v1c2-207ENSMUST00000156727 1279 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Gm10275-202ENSMUST00000168697 495 ntBASIC13.31□□□□□ -0.28
Msx1P13297 Gm28877-201ENSMUST00000191349 604 ntBASIC13.31□□□□□ -0.28
Msx1P13297 4930412E21Rik-201ENSMUST00000194267 778 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Gm38319-201ENSMUST00000194537 1266 ntBASIC13.31□□□□□ -0.28
Msx1P13297 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Gm10046-201ENSMUST00000208208 632 ntTSL 2 BASIC13.31□□□□□ -0.28
Msx1P13297 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Msx1P13297 Dupd1-202ENSMUST00000224735 548 ntBASIC13.31□□□□□ -0.28
Msx1P13297 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Gm10275-201ENSMUST00000092620 635 ntBASIC13.31□□□□□ -0.28
Msx1P13297 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
Msx1P13297 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Msx1P13297 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC13.31□□□□□ -0.28
Msx1P13297 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Msx1P13297 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Msx1P13297 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
Msx1P13297 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Msx1P13297 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Msx1P13297 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Msx1P13297 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Msx1P13297 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Msx1P13297 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms