Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC13.32□□□□□ -0.28
Lire1P11260 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Lire1P11260 Gm25948-201ENSMUST00000175334 112 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm25349-201ENSMUST00000177728 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm23616-201ENSMUST00000177797 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm25871-201ENSMUST00000177816 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm24752-201ENSMUST00000178240 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm24496-201ENSMUST00000178287 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm25649-201ENSMUST00000178476 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm25548-201ENSMUST00000178681 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm23147-201ENSMUST00000178841 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm26095-201ENSMUST00000179270 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm22171-201ENSMUST00000179283 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm23936-201ENSMUST00000179354 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm22619-201ENSMUST00000179516 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm25255-201ENSMUST00000179579 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm24755-201ENSMUST00000179691 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm26506-201ENSMUST00000179692 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm25086-201ENSMUST00000179931 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm23243-201ENSMUST00000180047 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm24659-201ENSMUST00000180212 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm24169-201ENSMUST00000180244 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm23689-201ENSMUST00000180354 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC13.32□□□□□ -0.28
Lire1P11260 Gm27359-201ENSMUST00000184153 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm27785-201ENSMUST00000184268 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm27466-201ENSMUST00000184396 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm27703-201ENSMUST00000184836 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Lire1P11260 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC13.32□□□□□ -0.28
Lire1P11260 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC13.32□□□□□ -0.28
Lire1P11260 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.32□□□□□ -0.28
Lire1P11260 Wdyhv1-206ENSMUST00000227142 786 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Lire1P11260 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Lire1P11260 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Lire1P11260 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
Lire1P11260 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Lire1P11260 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Lire1P11260 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
Lire1P11260 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
Lire1P11260 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC13.31□□□□□ -0.28
Lire1P11260 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC13.31□□□□□ -0.28
Lire1P11260 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Lire1P11260 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Lire1P11260 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC13.31□□□□□ -0.28
Lire1P11260 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC13.31□□□□□ -0.28
Lire1P11260 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC13.31□□□□□ -0.28
Lire1P11260 Gm22175-201ENSMUST00000175007 78 ntBASIC13.31□□□□□ -0.28
Lire1P11260 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Gm10253-201ENSMUST00000194270 940 ntBASIC13.31□□□□□ -0.28
Lire1P11260 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Lire1P11260 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC13.31□□□□□ -0.28
Lire1P11260 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Arhgef33-209ENSMUST00000225223 714 ntBASIC13.31□□□□□ -0.28
Lire1P11260 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Lire1P11260 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC13.31□□□□□ -0.28
Lire1P11260 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Lire1P11260 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Gm18244-201ENSMUST00000219747 1566 ntBASIC13.31□□□□□ -0.28
Lire1P11260 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Lire1P11260 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Lire1P11260 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Lire1P11260 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lire1P11260 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lire1P11260 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lire1P11260 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lire1P11260 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lire1P11260 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lire1P11260 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms