Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gm4081-201ENSMUST00000195287 1838 ntBASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Chmp6P0C0A3 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 AC166491.1-201ENSMUST00000227053 2308 ntBASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Mir1897-201ENSMUST00000122581 272 ntBASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 AC126408.1-201ENSMUST00000225184 523 ntBASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Chmp6P0C0A3 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Gm45453-201ENSMUST00000211758 853 ntBASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 AC121598.1-201ENSMUST00000228224 1019 ntBASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Gm5763-201ENSMUST00000155951 1530 ntBASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Chmp6P0C0A3 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 CT025610.1-201ENSMUST00000224552 1786 ntBASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
Chmp6P0C0A3 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms