Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vti1aO89116 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vti1aO89116 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vti1aO89116 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Vti1aO89116 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vti1aO89116 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vti1aO89116 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vti1aO89116 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC15.1■□□□□ 0.01
Vti1aO89116 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Vti1aO89116 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Vti1aO89116 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC15.09■□□□□ 0.01
Vti1aO89116 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC15.09■□□□□ 0.01
Vti1aO89116 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Gm15460-201ENSMUST00000118147 391 ntBASIC15.09■□□□□ 0.01
Vti1aO89116 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.09■□□□□ 0.01
Vti1aO89116 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Gm8602-201ENSMUST00000184045 607 ntBASIC15.09■□□□□ 0.01
Vti1aO89116 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC15.09■□□□□ 0.01
Vti1aO89116 AC155286.1-201ENSMUST00000218632 448 ntBASIC15.09■□□□□ 0.01
Vti1aO89116 Gm18624-201ENSMUST00000220966 658 ntBASIC15.09■□□□□ 0.01
Vti1aO89116 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 AC121598.1-201ENSMUST00000228224 1019 ntBASIC15.09■□□□□ 0.01
Vti1aO89116 Gm25857-201ENSMUST00000082788 129 ntBASIC15.09■□□□□ 0.01
Vti1aO89116 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Vti1aO89116 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC15.09■□□□□ 0.01
Vti1aO89116 Gm9252-201ENSMUST00000172364 1602 ntBASIC15.09■□□□□ 0.01
Vti1aO89116 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
Vti1aO89116 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vti1aO89116 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vti1aO89116 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vti1aO89116 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vti1aO89116 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Vti1aO89116 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vti1aO89116 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vti1aO89116 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vti1aO89116 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vti1aO89116 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC15.08■□□□□ 0.01
Vti1aO89116 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC15.08■□□□□ 0
Vti1aO89116 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC15.08■□□□□ 0
Vti1aO89116 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC15.08■□□□□ 0
Vti1aO89116 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC15.08■□□□□ 0
Vti1aO89116 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Gm45667-201ENSMUST00000210380 1316 ntBASIC15.08■□□□□ 0
Vti1aO89116 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC15.08■□□□□ 0
Vti1aO89116 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Vti1aO89116 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
Vti1aO89116 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC15.08■□□□□ 0
Vti1aO89116 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC15.08■□□□□ 0
Vti1aO89116 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vti1aO89116 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.08■□□□□ 0
Vti1aO89116 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC15.07■□□□□ 0
Vti1aO89116 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Vti1aO89116 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC15.07■□□□□ 0
Vti1aO89116 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC15.07■□□□□ 0
Vti1aO89116 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Vti1aO89116 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Vti1aO89116 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC15.07■□□□□ 0
Vti1aO89116 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC15.07■□□□□ 0
Vti1aO89116 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vti1aO89116 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Vti1aO89116 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC15.07■□□□□ 0
Vti1aO89116 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC15.07■□□□□ 0
Vti1aO89116 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Vti1aO89116 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.07■□□□□ 0
Vti1aO89116 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vti1aO89116 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC15.07■□□□□ 0
Vti1aO89116 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 61.8 ms