Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim54Q9ERP3 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim54Q9ERP3 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim54Q9ERP3 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim54Q9ERP3 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim54Q9ERP3 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim54Q9ERP3 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim54Q9ERP3 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
Trim54Q9ERP3 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trim54Q9ERP3 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trim54Q9ERP3 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Gm7558-201ENSMUST00000193221 1165 ntBASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 AC156560.2-201ENSMUST00000221232 264 ntBASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trim54Q9ERP3 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Gm13829-201ENSMUST00000119600 138 ntBASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Gm9002-201ENSMUST00000178437 499 ntBASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Gm18307-201ENSMUST00000206864 949 ntBASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Gm5425-201ENSMUST00000214125 459 ntBASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Gm5035-201ENSMUST00000215581 927 ntBASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Gm7446-201ENSMUST00000221035 1240 ntBASIC15.15■□□□□ 0.02
Trim54Q9ERP3 AC139350.3-201ENSMUST00000226151 420 ntBASIC15.15■□□□□ 0.02
Trim54Q9ERP3 AC150560.1-201ENSMUST00000227731 1187 ntBASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trim54Q9ERP3 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Ksr1-207ENSMUST00000226282 5260 ntBASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 AC155252.1-201ENSMUST00000226462 1208 ntBASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim54Q9ERP3 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms