Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Gm13233-201ENSMUST00000118760 1443 ntBASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Gm13244-201ENSMUST00000118855 1446 ntBASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Gm20632-201ENSMUST00000176760 2427 ntBASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Gm14494-201ENSMUST00000118786 435 ntBASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Gm6944-201ENSMUST00000182449 1006 ntBASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Tcf21-202ENSMUST00000218002 1788 ntBASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Ddx28Q9CWT6 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Gm44065-201ENSMUST00000203184 3527 ntBASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Gm12892-201ENSMUST00000117367 1146 ntBASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Gm9385-201ENSMUST00000117563 472 ntBASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Gm37935-201ENSMUST00000192012 982 ntBASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Olfr286-202ENSMUST00000205305 969 ntBASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 AC164565.1-201ENSMUST00000217520 1484 ntBASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Ddx28Q9CWT6 Gm44645-201ENSMUST00000205492 1653 ntBASIC13.15□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms