Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 AC124751.1-201ENSMUST00000222716 1408 ntBASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Gm8597-201ENSMUST00000191525 1109 ntBASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Smc1aQ9CU62 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Smc1aQ9CU62 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Smc1aQ9CU62 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Smc1aQ9CU62 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Smc1aQ9CU62 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Gm27920-201ENSMUST00000183953 96 ntBASIC15.7■□□□□ 0.1
Smc1aQ9CU62 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smc1aQ9CU62 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Gm15593-201ENSMUST00000122085 1008 ntBASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smc1aQ9CU62 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms