Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Gm42471-201ENSMUST00000201457 1865 ntBASIC13.69□□□□□ -0.22
Msh4Q99MT2 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msh4Q99MT2 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Gm13823-201ENSMUST00000119930 345 ntBASIC13.68□□□□□ -0.22
Msh4Q99MT2 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Gm38294-201ENSMUST00000192831 381 ntBASIC13.68□□□□□ -0.22
Msh4Q99MT2 AC158982.1-201ENSMUST00000228377 901 ntBASIC13.68□□□□□ -0.22
Msh4Q99MT2 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Msh4Q99MT2 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 AC166491.1-201ENSMUST00000227053 2308 ntBASIC13.67□□□□□ -0.22
Msh4Q99MT2 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC13.67□□□□□ -0.22
Msh4Q99MT2 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Gm28630-201ENSMUST00000187806 498 ntBASIC13.67□□□□□ -0.22
Msh4Q99MT2 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Rbfox2-208ENSMUST00000227930 1218 ntBASIC13.67□□□□□ -0.22
Msh4Q99MT2 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Ssr1-204ENSMUST00000225319 1610 ntBASIC13.67□□□□□ -0.22
Msh4Q99MT2 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Msh4Q99MT2 AC159621.2-201ENSMUST00000223519 1326 ntBASIC13.66□□□□□ -0.22
Msh4Q99MT2 Gm45630-201ENSMUST00000210243 1911 ntBASIC13.66□□□□□ -0.22
Msh4Q99MT2 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.66□□□□□ -0.22
Msh4Q99MT2 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms