Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Syne4Q8CII8 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Syne4Q8CII8 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC15.77■□□□□ 0.12
Syne4Q8CII8 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Syne4Q8CII8 AC168058.1-201ENSMUST00000219521 2282 ntBASIC15.77■□□□□ 0.12
Syne4Q8CII8 Ssr1-204ENSMUST00000225319 1610 ntBASIC15.77■□□□□ 0.12
Syne4Q8CII8 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Syne4Q8CII8 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC15.77■□□□□ 0.12
Syne4Q8CII8 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Syne4Q8CII8 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC15.77■□□□□ 0.12
Syne4Q8CII8 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC15.77■□□□□ 0.12
Syne4Q8CII8 Gm38241-201ENSMUST00000192641 898 ntBASIC15.77■□□□□ 0.12
Syne4Q8CII8 Gm38002-201ENSMUST00000193255 180 ntBASIC15.77■□□□□ 0.12
Syne4Q8CII8 Gm38266-201ENSMUST00000194931 421 ntBASIC15.77■□□□□ 0.12
Syne4Q8CII8 Gm3961-201ENSMUST00000204425 994 ntBASIC15.77■□□□□ 0.12
Syne4Q8CII8 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Syne4Q8CII8 Gm45930-201ENSMUST00000221330 292 ntBASIC15.77■□□□□ 0.12
Syne4Q8CII8 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Syne4Q8CII8 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Syne4Q8CII8 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Syne4Q8CII8 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Syne4Q8CII8 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Syne4Q8CII8 Gm4081-201ENSMUST00000195287 1838 ntBASIC15.77■□□□□ 0.11
Syne4Q8CII8 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Syne4Q8CII8 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Syne4Q8CII8 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC15.77■□□□□ 0.11
Syne4Q8CII8 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Mir3102-201ENSMUST00000175555 104 ntBASIC15.76■□□□□ 0.11
Syne4Q8CII8 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Gm37008-201ENSMUST00000195712 319 ntBASIC15.76■□□□□ 0.11
Syne4Q8CII8 CT030704.2-201ENSMUST00000228887 494 ntBASIC15.76■□□□□ 0.11
Syne4Q8CII8 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Syne4Q8CII8 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gm12203-201ENSMUST00000118235 598 ntBASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gm12209-201ENSMUST00000120089 596 ntBASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gm13350-201ENSMUST00000120519 479 ntBASIC15.75■□□□□ 0.11
Syne4Q8CII8 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gm7584-201ENSMUST00000175829 940 ntBASIC15.75■□□□□ 0.11
Syne4Q8CII8 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gm27501-201ENSMUST00000183599 107 ntBASIC15.75■□□□□ 0.11
Syne4Q8CII8 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gm18827-201ENSMUST00000188341 790 ntBASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gm13730-201ENSMUST00000121036 1462 ntBASIC15.75■□□□□ 0.11
Syne4Q8CII8 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Syne4Q8CII8 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms