Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trim28Q62318 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC18.08■□□□□ 0.49
Trim28Q62318 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim28Q62318 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim28Q62318 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trim28Q62318 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC18.08■□□□□ 0.49
Trim28Q62318 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim28Q62318 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.49
Trim28Q62318 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trim28Q62318 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim28Q62318 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim28Q62318 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim28Q62318 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim28Q62318 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim28Q62318 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Trim28Q62318 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC18.08■□□□□ 0.48
Trim28Q62318 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Trim28Q62318 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Gm43438-201ENSMUST00000198133 379 ntBASIC18.08■□□□□ 0.48
Trim28Q62318 Gm42550-201ENSMUST00000201553 960 ntBASIC18.08■□□□□ 0.48
Trim28Q62318 Gm18473-201ENSMUST00000220543 868 ntBASIC18.08■□□□□ 0.48
Trim28Q62318 Gm8598-201ENSMUST00000221184 836 ntBASIC18.08■□□□□ 0.48
Trim28Q62318 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Trim28Q62318 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC18.08■□□□□ 0.48
Trim28Q62318 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim28Q62318 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC18.07■□□□□ 0.48
Trim28Q62318 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Trim28Q62318 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Trim28Q62318 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Trim28Q62318 Gm27839-201ENSMUST00000184242 106 ntBASIC18.07■□□□□ 0.48
Trim28Q62318 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Trim28Q62318 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Trim28Q62318 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim28Q62318 Gm9816-201ENSMUST00000122292 1414 ntBASIC18.06■□□□□ 0.48
Trim28Q62318 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trim28Q62318 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trim28Q62318 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Trim28Q62318 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Trim28Q62318 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Gm29608-201ENSMUST00000190444 463 ntBASIC18.06■□□□□ 0.48
Trim28Q62318 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim28Q62318 Gm44799-201ENSMUST00000207639 1202 ntBASIC18.06■□□□□ 0.48
Trim28Q62318 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
Trim28Q62318 AC073947.2-201ENSMUST00000215888 1130 ntBASIC18.06■□□□□ 0.48
Trim28Q62318 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim28Q62318 Ankra2-208ENSMUST00000226100 1476 ntBASIC18.06■□□□□ 0.48
Trim28Q62318 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim28Q62318 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trim28Q62318 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms