Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Usf1Q61069 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Usf1Q61069 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC12.73□□□□□ -0.37
Usf1Q61069 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Ankra2-208ENSMUST00000226100 1476 ntBASIC12.72□□□□□ -0.37
Usf1Q61069 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Usf1Q61069 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC12.72□□□□□ -0.37
Usf1Q61069 Gm14723-201ENSMUST00000118686 215 ntBASIC12.72□□□□□ -0.37
Usf1Q61069 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC12.72□□□□□ -0.37
Usf1Q61069 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC12.72□□□□□ -0.37
Usf1Q61069 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC12.72□□□□□ -0.37
Usf1Q61069 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC12.72□□□□□ -0.37
Usf1Q61069 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC12.72□□□□□ -0.37
Usf1Q61069 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Usf1Q61069 Gm17383-201ENSMUST00000078739 1041 ntBASIC12.72□□□□□ -0.37
Usf1Q61069 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Usf1Q61069 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
Usf1Q61069 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Usf1Q61069 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Usf1Q61069 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Usf1Q61069 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Usf1Q61069 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC12.71□□□□□ -0.37
Usf1Q61069 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC12.71□□□□□ -0.37
Usf1Q61069 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.71□□□□□ -0.37
Usf1Q61069 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC12.71□□□□□ -0.37
Usf1Q61069 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC12.71□□□□□ -0.37
Usf1Q61069 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Usf1Q61069 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Usf1Q61069 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Usf1Q61069 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Usf1Q61069 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Usf1Q61069 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Usf1Q61069 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Usf1Q61069 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Usf1Q61069 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Usf1Q61069 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Usf1Q61069 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Usf1Q61069 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Usf1Q61069 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Usf1Q61069 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Usf1Q61069 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Usf1Q61069 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Usf1Q61069 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Usf1Q61069 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Usf1Q61069 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Usf1Q61069 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC12.7□□□□□ -0.38
Usf1Q61069 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Usf1Q61069 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Usf1Q61069 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Usf1Q61069 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Usf1Q61069 Pcgf5-211ENSMUST00000225920 6443 ntBASIC12.7□□□□□ -0.38
Usf1Q61069 Gm11803-201ENSMUST00000119966 444 ntBASIC12.7□□□□□ -0.38
Usf1Q61069 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms