Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Gm44065-201ENSMUST00000203184 3527 ntBASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Gm13597-201ENSMUST00000121239 375 ntBASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Gm27494-201ENSMUST00000184735 189 ntBASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Gm8597-201ENSMUST00000191525 1109 ntBASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col28a1Q2UY11 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 AC164565.1-201ENSMUST00000217520 1484 ntBASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Gm13616-201ENSMUST00000120600 222 ntBASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Mir1895-201ENSMUST00000122615 79 ntBASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms