Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC11.94□□□□□ -0.5
Col8a1Q00780 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Col8a1Q00780 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC11.94□□□□□ -0.5
Col8a1Q00780 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC11.94□□□□□ -0.5
Col8a1Q00780 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC11.94□□□□□ -0.5
Col8a1Q00780 Gm16570-201ENSMUST00000161951 436 ntBASIC11.94□□□□□ -0.5
Col8a1Q00780 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Mir8109-201ENSMUST00000184375 117 ntBASIC11.94□□□□□ -0.5
Col8a1Q00780 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC11.94□□□□□ -0.5
Col8a1Q00780 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC11.94□□□□□ -0.5
Col8a1Q00780 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC11.94□□□□□ -0.5
Col8a1Q00780 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC11.94□□□□□ -0.5
Col8a1Q00780 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Col8a1Q00780 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Col8a1Q00780 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm37736-201ENSMUST00000193564 2802 ntBASIC11.93□□□□□ -0.5
Col8a1Q00780 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC11.93□□□□□ -0.5
Col8a1Q00780 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm10327-201ENSMUST00000105222 1002 ntBASIC11.93□□□□□ -0.5
Col8a1Q00780 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Col8a1Q00780 Trav13-3-201ENSMUST00000117226 336 ntBASIC11.93□□□□□ -0.5
Col8a1Q00780 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm13350-201ENSMUST00000120519 479 ntBASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col8a1Q00780 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm27516-201ENSMUST00000184237 98 ntBASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm4857-201ENSMUST00000192718 785 ntBASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm43822-201ENSMUST00000200285 476 ntBASIC11.93□□□□□ -0.5
Col8a1Q00780 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC11.93□□□□□ -0.5
Col8a1Q00780 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm9182-201ENSMUST00000217829 639 ntBASIC11.93□□□□□ -0.5
Col8a1Q00780 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Gm17383-201ENSMUST00000078739 1041 ntBASIC11.93□□□□□ -0.5
Col8a1Q00780 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC11.93□□□□□ -0.5
Col8a1Q00780 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC11.93□□□□□ -0.5
Col8a1Q00780 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col8a1Q00780 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC11.92□□□□□ -0.5
Col8a1Q00780 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col8a1Q00780 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms