Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC13.35□□□□□ -0.27
Msx1P13297 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Msx1P13297 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Msx1P13297 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC13.34□□□□□ -0.27
Msx1P13297 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC13.34□□□□□ -0.27
Msx1P13297 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Msx1P13297 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Gm13829-201ENSMUST00000119600 138 ntBASIC13.34□□□□□ -0.27
Msx1P13297 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC13.34□□□□□ -0.27
Msx1P13297 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC13.34□□□□□ -0.27
Msx1P13297 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Msx1P13297 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC13.34□□□□□ -0.27
Msx1P13297 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC13.34□□□□□ -0.27
Msx1P13297 Gm36377-201ENSMUST00000220833 757 ntTSL 2 BASIC13.34□□□□□ -0.27
Msx1P13297 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Msx1P13297 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Msx1P13297 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Msx1P13297 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Msx1P13297 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC13.34□□□□□ -0.27
Msx1P13297 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
Msx1P13297 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Msx1P13297 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msx1P13297 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msx1P13297 Gm14667-201ENSMUST00000119448 1350 ntBASIC13.33□□□□□ -0.27
Msx1P13297 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msx1P13297 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msx1P13297 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Msx1P13297 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC13.33□□□□□ -0.28
Msx1P13297 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC13.33□□□□□ -0.28
Msx1P13297 Gm5083-202ENSMUST00000163056 1204 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Gm37917-201ENSMUST00000194711 392 ntBASIC13.33□□□□□ -0.28
Msx1P13297 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC13.33□□□□□ -0.28
Msx1P13297 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC13.33□□□□□ -0.28
Msx1P13297 AC154517.1-201ENSMUST00000222785 629 ntTSL 3 BASIC13.33□□□□□ -0.28
Msx1P13297 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Prl6a1-201ENSMUST00000091679 1093 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Msx1P13297 Prl6a1-202ENSMUST00000091680 868 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC13.33□□□□□ -0.28
Msx1P13297 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Msx1P13297 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Msx1P13297 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Msx1P13297 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
Msx1P13297 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Msx1P13297 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Msx1P13297 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Msx1P13297 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Msx1P13297 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Msx1P13297 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Msx1P13297 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms