Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm29705-201ENSMUST00000212598 474 ntBASIC12.46□□□□□ -0.41
Col5a1O88207 Gm18935-201ENSMUST00000212692 664 ntBASIC12.46□□□□□ -0.41
Col5a1O88207 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.46□□□□□ -0.41
Col5a1O88207 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Gm26513-201ENSMUST00000181802 2489 ntBASIC12.46□□□□□ -0.41
Col5a1O88207 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Col5a1O88207 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC12.46□□□□□ -0.41
Col5a1O88207 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Gm43697-201ENSMUST00000199637 2581 ntBASIC12.46□□□□□ -0.41
Col5a1O88207 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col5a1O88207 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC12.46□□□□□ -0.42
Col5a1O88207 Ankra2-208ENSMUST00000226100 1476 ntBASIC12.46□□□□□ -0.42
Col5a1O88207 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Col5a1O88207 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.46□□□□□ -0.42
Col5a1O88207 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
Col5a1O88207 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
Col5a1O88207 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC12.46□□□□□ -0.42
Col5a1O88207 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12.46□□□□□ -0.42
Col5a1O88207 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC12.46□□□□□ -0.42
Col5a1O88207 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Gm17376-201ENSMUST00000166016 84 ntBASIC12.46□□□□□ -0.42
Col5a1O88207 Gm5850-201ENSMUST00000192923 1206 ntBASIC12.46□□□□□ -0.42
Col5a1O88207 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC12.46□□□□□ -0.42
Col5a1O88207 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col5a1O88207 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC12.45□□□□□ -0.42
Col5a1O88207 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC12.45□□□□□ -0.42
Col5a1O88207 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC12.45□□□□□ -0.42
Col5a1O88207 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Gm15889-202ENSMUST00000212669 2443 ntBASIC12.45□□□□□ -0.42
Col5a1O88207 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Col5a1O88207 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Gm8213-201ENSMUST00000118191 441 ntBASIC12.45□□□□□ -0.42
Col5a1O88207 Gm12203-201ENSMUST00000118235 598 ntBASIC12.45□□□□□ -0.42
Col5a1O88207 Gm12209-201ENSMUST00000120089 596 ntBASIC12.45□□□□□ -0.42
Col5a1O88207 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC12.45□□□□□ -0.42
Col5a1O88207 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC12.45□□□□□ -0.42
Col5a1O88207 Gm22902-201ENSMUST00000158488 302 ntBASIC12.45□□□□□ -0.42
Col5a1O88207 Gm4271-201ENSMUST00000174444 973 ntBASIC12.45□□□□□ -0.42
Col5a1O88207 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12.45□□□□□ -0.42
Col5a1O88207 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC12.45□□□□□ -0.42
Col5a1O88207 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Col5a1O88207 Sorbs3-204ENSMUST00000227929 2460 ntBASIC12.45□□□□□ -0.42
Col5a1O88207 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Zkscan14-203ENSMUST00000198959 2243 ntBASIC12.45□□□□□ -0.42
Col5a1O88207 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col5a1O88207 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC12.45□□□□□ -0.42
Col5a1O88207 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Col5a1O88207 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
Col5a1O88207 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.44□□□□□ -0.42
Col5a1O88207 Gm44397-201ENSMUST00000195950 113 ntBASIC12.44□□□□□ -0.42
Col5a1O88207 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Col5a1O88207 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Col5a1O88207 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Col5a1O88207 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC12.44□□□□□ -0.42
Col5a1O88207 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC12.44□□□□□ -0.42
Col5a1O88207 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Mir686-201ENSMUST00000102174 109 ntBASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms