Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Gm38391-201ENSMUST00000191720 4069 ntBASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Gm7336-201ENSMUST00000107041 1232 ntBASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Gm37230-201ENSMUST00000194491 818 ntBASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Gm5779-201ENSMUST00000218467 910 ntBASIC13.25□□□□□ -0.29
Trim3Q9R1R2 AC124732.2-201ENSMUST00000221977 316 ntBASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Trim3Q9R1R2 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Gm9252-201ENSMUST00000172364 1602 ntBASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Gm42466-201ENSMUST00000202099 1301 ntBASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Gm13015-201ENSMUST00000118674 204 ntBASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Gm15693-201ENSMUST00000120470 637 ntBASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Gm27430-201ENSMUST00000184585 107 ntBASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Gm44333-201ENSMUST00000197168 107 ntBASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Gm18049-201ENSMUST00000208909 581 ntBASIC13.24□□□□□ -0.29
Trim3Q9R1R2 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 AC158529.1-201ENSMUST00000223618 239 ntBASIC13.24□□□□□ -0.29
Trim3Q9R1R2 AC154621.1-201ENSMUST00000226155 1119 ntBASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Gm42769-201ENSMUST00000198576 1659 ntBASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Trim3Q9R1R2 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms