Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx28Q9CWT6 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx28Q9CWT6 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC13.19□□□□□ -0.3
Ddx28Q9CWT6 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx28Q9CWT6 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx28Q9CWT6 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx28Q9CWT6 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ddx28Q9CWT6 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Ddx28Q9CWT6 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Gm9726-201ENSMUST00000180321 678 ntBASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Mir8117-201ENSMUST00000184773 107 ntBASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Gm45683-201ENSMUST00000210825 1247 ntBASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Ddx28Q9CWT6 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gm38346-201ENSMUST00000192379 2639 ntBASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gm4691-201ENSMUST00000182339 1000 ntBASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gm2451-201ENSMUST00000199447 999 ntBASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gm10290-201ENSMUST00000200451 999 ntBASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 AC174742.1-201ENSMUST00000218272 304 ntBASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gm12626-201ENSMUST00000117339 1983 ntBASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gm12623-201ENSMUST00000119849 1983 ntBASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Ddx28Q9CWT6 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms